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Tankyrase 2 in complex with an inhibitor (OUL228)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OWS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 100 mM Tris pH=8.5, 200mM Lithium Sulphate, 20% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.63 53.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.69 α = 90 b = 98.18 β = 90 c = 117.48 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2020-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 99.95 0.999 22.06 13.5 30936
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.175 0.814
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5OWS 2.1 49.138 30935 1547 99.981 0.183 0.1807 0.1873 0.2261 0.2339 50.196
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.405 -2.273 2.678
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.243 r_dihedral_angle_4_deg 17.117 r_dihedral_angle_3_deg 13.972 r_dihedral_angle_1_deg 6.936 r_lrange_it 6.097 r_lrange_other 6.062 r_scangle_it 4.084 r_scangle_other 4.069 r_mcangle_it 3.563 r_mcangle_other 3.563
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.243 r_dihedral_angle_4_deg 17.117 r_dihedral_angle_3_deg 13.972 r_dihedral_angle_1_deg 6.936 r_lrange_it 6.097 r_lrange_other 6.062 r_scangle_it 4.084 r_scangle_other 4.069 r_mcangle_it 3.563 r_mcangle_other 3.563 r_scbond_it 2.55 r_scbond_other 2.516 r_mcbond_it 2.338 r_mcbond_other 2.336 r_angle_refined_deg 1.229 r_angle_other_deg 1.144 r_symmetry_xyhbond_nbd_refined 0.19 r_nbd_refined 0.178 r_symmetry_nbd_other 0.168 r_nbd_other 0.163 r_nbtor_refined 0.159 r_symmetry_nbd_refined 0.148 r_xyhbond_nbd_refined 0.146 r_symmetry_nbtor_other 0.07 r_chiral_restr 0.045 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3317 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing