☰ Navigation Tabs
Crystal structure of AP2 Mu2 in complex with FCHO2 WxxPhi motif (P3221 crystal form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 289 20mM Sodium formate; 20mM Ammonium acetate; 20mM Sodium citrate tribasic dihydrate; 20mM Sodium potassium tartrate tetrahydrate; 20mM Sodium oxamate, 100mM Imidazole MES monohydrate pH6.5 , 20% v/v Glycerol; 10% w/v PEG 4000
Crystal Properties Matthews coefficient Solvent content 3.02 59.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.364 α = 90 b = 66.364 β = 90 c = 161.556 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2018-07-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97950 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 57.47 100 0.082 0.019 19 19.2 50587
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 100 2.696 2.779 0.668 1.1 17
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE Phaser 1.65 57.47 50495 2538 99.939 0.184 0.1832 0.1948 0.202 0.215 32.847
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.097 -0.048 -0.097 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.948 r_dihedral_angle_4_deg 19.593 r_dihedral_angle_3_deg 14.052 r_lrange_it 9.041 r_lrange_other 8.903 r_dihedral_angle_1_deg 7.93 r_scangle_other 6.85 r_scangle_it 6.849 r_scbond_it 4.511 r_scbond_other 4.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.948 r_dihedral_angle_4_deg 19.593 r_dihedral_angle_3_deg 14.052 r_lrange_it 9.041 r_lrange_other 8.903 r_dihedral_angle_1_deg 7.93 r_scangle_other 6.85 r_scangle_it 6.849 r_scbond_it 4.511 r_scbond_other 4.51 r_mcangle_it 4.192 r_mcangle_other 4.154 r_mcbond_it 3.022 r_mcbond_other 2.969 r_angle_refined_deg 1.801 r_angle_other_deg 1.388 r_symmetry_xyhbond_nbd_refined 0.248 r_nbd_refined 0.196 r_symmetry_nbd_other 0.188 r_xyhbond_nbd_refined 0.171 r_nbtor_refined 0.168 r_symmetry_xyhbond_nbd_other 0.152 r_symmetry_nbd_refined 0.146 r_nbd_other 0.127 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.078 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2162 Nucleic Acid Atoms Solvent Atoms 247 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement DIALS data reduction DIALS data scaling PHASER phasing