7OHO

Crystal structure of AP2 FCHO2 chimera


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.228918% PEG 12000 0.1M Na/K phosphate pH 6.2 0.2M NaCl 4mM DTT in the presence of 3-fold molar excess of IP6.
Crystal Properties
Matthews coefficientSolvent content
2.6954.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 122.04α = 90
b = 122.04β = 90
c = 257.41γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2015-11-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.900DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8866.6199.90.1040.1150.0370.99813.59.85111879.944
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.882.9599.91.8032.0190.6490.5291.29.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUEPhaser2.8861.09551053254799.9780.1870.18190.273496.59
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.5390.2690.539-1.747
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.397
r_dihedral_angle_3_deg20.251
r_dihedral_angle_4_deg19.128
r_lrange_it16.976
r_lrange_other16.976
r_mcangle_it13.16
r_mcangle_other13.16
r_scangle_it12.86
r_scangle_other12.859
r_mcbond_it9.079
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.397
r_dihedral_angle_3_deg20.251
r_dihedral_angle_4_deg19.128
r_lrange_it16.976
r_lrange_other16.976
r_mcangle_it13.16
r_mcangle_other13.16
r_scangle_it12.86
r_scangle_other12.859
r_mcbond_it9.079
r_mcbond_other9.079
r_scbond_it8.676
r_scbond_other8.675
r_dihedral_angle_1_deg7.769
r_angle_refined_deg1.606
r_angle_other_deg1.183
r_symmetry_nbd_refined0.276
r_nbd_other0.257
r_nbd_refined0.224
r_symmetry_xyhbond_nbd_refined0.214
r_symmetry_nbd_other0.194
r_xyhbond_nbd_refined0.186
r_nbtor_refined0.167
r_symmetry_xyhbond_nbd_other0.081
r_symmetry_nbtor_other0.078
r_chiral_restr0.065
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13621
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms60

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing