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Plant peptide hormone receptor H1I2S1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5IXO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 291 0.2 M ammonium sulphate
0.1 M Bis-Tris
25 % w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.53 65.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.817 α = 90 b = 88.078 β = 90 c = 166.367 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2020-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.254716 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 46.973 100 0.114 0.124 0.047 0.999 14.5 12.9 65575
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.25 1.992 2.202 0.93 0.465 10.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5IXO 2.2 46.973 65519 3215 99.98 0.2 0.198 0.2059 0.2343 0.2402 53.542
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.989 3.249 -1.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_1_deg 47.008 r_dihedral_angle_2_deg 40.796 r_dihedral_angle_4_deg 17.875 r_dihedral_angle_other_3_deg 14.959 r_dihedral_angle_3_deg 14.345 r_dihedral_angle_1_deg 6.271 r_lrange_it 5.058 r_lrange_other 5.054 r_scangle_it 4.808 r_scangle_other 4.704
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_1_deg 47.008 r_dihedral_angle_2_deg 40.796 r_dihedral_angle_4_deg 17.875 r_dihedral_angle_other_3_deg 14.959 r_dihedral_angle_3_deg 14.345 r_dihedral_angle_1_deg 6.271 r_lrange_it 5.058 r_lrange_other 5.054 r_scangle_it 4.808 r_scangle_other 4.704 r_scbond_it 3.446 r_scbond_other 3.371 r_mcangle_it 2.264 r_mcangle_other 2.263 r_mcbond_it 1.545 r_mcbond_other 1.545 r_angle_refined_deg 1.452 r_angle_other_deg 1.351 r_nbd_other 0.222 r_nbd_refined 0.191 r_symmetry_nbd_other 0.184 r_nbtor_refined 0.161 r_xyhbond_nbd_refined 0.144 r_symmetry_nbd_refined 0.136 r_symmetry_xyhbond_nbd_refined 0.117 r_symmetry_nbtor_other 0.111 r_chiral_restr 0.061 r_ext_dist_refined_d 0.034 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5920 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 558
Software Software Software Name Purpose REFMAC refinement Aimless data scaling xia2 data reduction Coot model building