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Plant peptide hormone receptor H1I1S1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5IXO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 291 0.2 M ammonium citrate pH 7.0
20 % w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.4 63.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.735 α = 90 b = 146.405 β = 90 c = 169.645 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2019-10-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.999990 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 169.64 100 0.341 0.354 0.096 0.998 9.5 26 99190
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.38 2.42 3.662 3.809 1.043 0.669 25.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5IXO 2.38 111.083 99095 4974 99.993 0.235 0.2343 0.2476 0.2185 43.014
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.042 -1.347 -3.695
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.716 r_dihedral_angle_other_1_deg 28.808 r_dihedral_angle_4_deg 14.701 r_dihedral_angle_3_deg 13.031 r_dihedral_angle_other_3_deg 6.173 r_lrange_it 5.908 r_lrange_other 5.908 r_dihedral_angle_1_deg 5.442 r_scangle_it 3.482 r_scangle_other 3.482
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.716 r_dihedral_angle_other_1_deg 28.808 r_dihedral_angle_4_deg 14.701 r_dihedral_angle_3_deg 13.031 r_dihedral_angle_other_3_deg 6.173 r_lrange_it 5.908 r_lrange_other 5.908 r_dihedral_angle_1_deg 5.442 r_scangle_it 3.482 r_scangle_other 3.482 r_mcangle_it 2.775 r_mcangle_other 2.775 r_scbond_it 2.389 r_scbond_other 2.389 r_mcbond_it 1.705 r_mcbond_other 1.705 r_angle_other_deg 1.295 r_angle_refined_deg 1.264 r_symmetry_xyhbond_nbd_refined 0.186 r_nbd_other 0.183 r_symmetry_nbd_other 0.182 r_nbd_refined 0.174 r_nbtor_refined 0.155 r_xyhbond_nbd_refined 0.125 r_ext_dist_refined_d 0.116 r_symmetry_nbd_refined 0.112 r_symmetry_nbtor_other 0.085 r_ncsr_local_group_3 0.079 r_ncsr_local_group_1 0.063 r_ncsr_local_group_2 0.063 r_chiral_restr 0.058 r_symmetry_xyhbond_nbd_other 0.034 r_xyhbond_nbd_other 0.02 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11770 Nucleic Acid Atoms Solvent Atoms 276 Heterogen Atoms 707
Software Software Software Name Purpose REFMAC refinement Aimless data scaling xia2 data reduction Coot model building PHASER phasing