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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N-(2,2-diphenylethyl)-1,5-dimethyl-N-(2-(methylamino)-2-oxoethyl)-6-oxo-1,6-dihydropyridine-3-carboxamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other in house structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.26 45.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.101 α = 90 b = 52.536 β = 90 c = 32.06 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2016-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 52.54 94.4 0.023 0.995 26.9 2.8 15685
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 75 0.155 0.629 5.5 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE in house structure 1.602 29.725 15536 772 93.326 0.156 0.1548 0.1672 0.179 0.1915 20.415
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.111 -0.384 0.273
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.297 r_dihedral_angle_4_deg 19.377 r_dihedral_angle_3_deg 11.066 r_lrange_it 5.779 r_lrange_other 5.504 r_dihedral_angle_1_deg 4.783 r_scangle_it 3.169 r_scangle_other 3.167 r_mcangle_it 1.985 r_mcangle_other 1.983
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.297 r_dihedral_angle_4_deg 19.377 r_dihedral_angle_3_deg 11.066 r_lrange_it 5.779 r_lrange_other 5.504 r_dihedral_angle_1_deg 4.783 r_scangle_it 3.169 r_scangle_other 3.167 r_mcangle_it 1.985 r_mcangle_other 1.983 r_scbond_it 1.884 r_scbond_other 1.883 r_angle_other_deg 1.242 r_mcbond_it 1.175 r_mcbond_other 1.174 r_angle_refined_deg 1.166 r_nbd_refined 0.194 r_nbtor_refined 0.17 r_symmetry_nbd_other 0.164 r_symmetry_xyhbond_nbd_refined 0.139 r_nbd_other 0.123 r_xyhbond_nbd_refined 0.122 r_symmetry_nbd_refined 0.114 r_symmetry_nbtor_other 0.076 r_chiral_restr 0.062 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 910 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling