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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH N-methyl-4-propionyl-1H-pyrrole-2-carboxamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other In house
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.23 44.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.325 α = 90 b = 52.773 β = 90 c = 31.845 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2015-01-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 42.42 95.9 0.999 31.3 3 14271
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.74 85.2 0.821 5.8 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE In house 1.653 42.42 14214 699 94.836 0.158 0.1565 0.1847 0.1905 23.595
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.379 -0.777 0.398
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.518 r_dihedral_angle_4_deg 19.244 r_dihedral_angle_3_deg 11.293 r_lrange_it 5.697 r_lrange_other 5.697 r_dihedral_angle_1_deg 4.884 r_scangle_it 3.215 r_scangle_other 3.212 r_scbond_it 1.936 r_scbond_other 1.934
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.518 r_dihedral_angle_4_deg 19.244 r_dihedral_angle_3_deg 11.293 r_lrange_it 5.697 r_lrange_other 5.697 r_dihedral_angle_1_deg 4.884 r_scangle_it 3.215 r_scangle_other 3.212 r_scbond_it 1.936 r_scbond_other 1.934 r_mcangle_other 1.755 r_mcangle_it 1.748 r_angle_other_deg 1.221 r_angle_refined_deg 1.15 r_mcbond_it 1.077 r_mcbond_other 1.042 r_nbd_refined 0.194 r_nbtor_refined 0.163 r_symmetry_nbd_other 0.161 r_nbd_other 0.153 r_symmetry_nbd_refined 0.128 r_xyhbond_nbd_refined 0.107 r_symmetry_xyhbond_nbd_refined 0.101 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.059 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 931 Nucleic Acid Atoms Solvent Atoms 202 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling