7ODM

AmGSTF1 Y118S variant

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	Morpheus screen

Crystal Properties
Matthews coefficient	Solvent content
3.3	62.74

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 112.611	α = 90
b = 112.611	β = 90
c = 103.646	γ = 90

Symmetry
Space Group	I 41 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2018-07-30	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.9159	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.6	45.34	100	0.094	22.7	26.1		10574

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.6	2.72			1.01

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6TK8	2.6	45.338	10565	549	99.962	0.191	0.1878	0.257	76.103

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.43			-2.43		4.861

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.811
r_dihedral_angle_4_deg	24.82
r_dihedral_angle_3_deg	19.602
r_dihedral_angle_1_deg	7.949
r_lrange_it	7.647
r_lrange_other	7.636
r_scangle_it	4.146
r_scangle_other	4.145
r_mcangle_it	3.71
r_mcangle_other	3.708
r_scbond_it	2.723
r_scbond_other	2.677
r_mcbond_it	2.37
r_mcbond_other	2.369
r_angle_refined_deg	2.066
r_angle_other_deg	1.393
r_symmetry_xyhbond_nbd_refined	0.308
r_nbd_refined	0.223
r_xyhbond_nbd_refined	0.196
r_symmetry_nbd_other	0.192
r_nbtor_refined	0.182
r_symmetry_nbd_refined	0.134
r_nbd_other	0.127
r_chiral_restr	0.099
r_symmetry_nbtor_other	0.089
r_bond_refined_d	0.014
r_gen_planes_refined	0.011
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1697
Nucleic Acid Atoms
Solvent Atoms	26
Heterogen Atoms	20

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
PHASER	phasing