7OBO

GSTF1 from Alopecurus myosuroides


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION293Morpheus screen followed by screening
Crystal Properties
Matthews coefficientSolvent content
3.2462.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 112.896α = 90
b = 112.896β = 90
c = 101.669γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2018-07-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.91587DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.335.71000.0692626394340
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.380.971

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE6TJS2.335.71489571599.8390.1950.19310.2467.932
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.761-0.7611.521
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.47
r_dihedral_angle_4_deg20.69
r_dihedral_angle_3_deg18.933
r_dihedral_angle_1_deg7.496
r_lrange_it7.149
r_lrange_other7.128
r_scangle_other4.804
r_scangle_it4.802
r_mcangle_it3.576
r_mcangle_other3.576
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.47
r_dihedral_angle_4_deg20.69
r_dihedral_angle_3_deg18.933
r_dihedral_angle_1_deg7.496
r_lrange_it7.149
r_lrange_other7.128
r_scangle_other4.804
r_scangle_it4.802
r_mcangle_it3.576
r_mcangle_other3.576
r_scbond_it3.256
r_scbond_other3.254
r_mcbond_it2.506
r_mcbond_other2.5
r_angle_refined_deg1.97
r_angle_other_deg1.422
r_nbd_refined0.214
r_symmetry_nbd_refined0.207
r_symmetry_nbd_other0.19
r_nbtor_refined0.182
r_nbd_other0.169
r_xyhbond_nbd_refined0.168
r_chiral_restr0.099
r_symmetry_nbtor_other0.087
r_symmetry_xyhbond_nbd_refined0.028
r_bond_refined_d0.014
r_gen_planes_refined0.012
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1712
Nucleic Acid Atoms
Solvent Atoms51
Heterogen Atoms32

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing