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conserved hypothetical protein residues 311-335 from Candidatus Magnetomorum sp. HK-1 fused to GCN4 adaptors, mutant beta2/A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7OAA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 0.1 M tri-sodium citrate pH 5.5, 20% (w/v) PEG 3000
Crystal Properties Matthews coefficient Solvent content 2.24 44.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.126 α = 90 b = 38.769 β = 94.846 c = 132.277 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2017-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.69 37.19 97.9 0.082 1 13.73 6.66 29121
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.69 1.8 92.6 0.912 0.86 1.78 6.76
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7OAA 1.694 37.19 29118 1456 97.902 0.223 0.2204 0.2216 0.2678 0.2682 34.516
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.799 -1.263 0.164 0.837
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.442 r_dihedral_angle_3_deg 15.469 r_dihedral_angle_4_deg 10.94 r_lrange_it 8.43 r_lrange_other 8.406 r_scangle_it 6.553 r_scangle_other 6.552 r_scbond_it 4.324 r_scbond_other 4.323 r_mcangle_other 3.429
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.442 r_dihedral_angle_3_deg 15.469 r_dihedral_angle_4_deg 10.94 r_lrange_it 8.43 r_lrange_other 8.406 r_scangle_it 6.553 r_scangle_other 6.552 r_scbond_it 4.324 r_scbond_other 4.323 r_mcangle_other 3.429 r_mcangle_it 3.427 r_dihedral_angle_1_deg 3.232 r_mcbond_it 2.448 r_mcbond_other 2.438 r_angle_other_deg 1.103 r_angle_refined_deg 1.008 r_symmetry_xyhbond_nbd_refined 0.291 r_nbd_refined 0.237 r_symmetry_nbd_refined 0.203 r_nbd_other 0.194 r_ncsr_local_group_1 0.182 r_nbtor_refined 0.173 r_ncsr_local_group_2 0.167 r_ncsr_local_group_3 0.161 r_symmetry_nbd_other 0.14 r_xyhbond_nbd_refined 0.131 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.052 r_xyhbond_nbd_other 0.042 r_bond_refined_d 0.007 r_bond_other_d 0.004 r_gen_planes_refined 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2010 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing