7OAD | pdb_00007oad

conserved hypothetical protein residues 311-335 from Candidatus Magnetomorum sp. HK-1 fused to GCN4 adaptors, mutant beta1/A, crystal form II

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7OAA

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		294	0.1M tri-sodium citrate pH 4.5, 7.1% PEG 10000

Crystal Properties
Matthews coefficient	Solvent content
2.28	45.96

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 36.351	α = 90
b = 38.561	β = 98.877
c = 99.254	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X 16M		2020-06-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X10SA	0.9998	SLS	X10SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	49.03	99.7	0.047	1	19.67	6.71		18659

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.12	99.7		0.753	0.95	2.44	6.63

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	7OAA	2	49.03	18657	933	99.711	0.256	0.2535	0.26	0.2939	0.29	75.374

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.155		7.131	-0.534		0.44

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	41.042
r_dihedral_angle_4_deg	17.273
r_dihedral_angle_3_deg	16.475
r_lrange_it	5.745
r_lrange_other	5.743
r_scangle_it	4.513
r_scangle_other	4.511
r_dihedral_angle_1_deg	3.874
r_scbond_it	2.91
r_scbond_other	2.908
r_mcangle_other	2.537
r_mcangle_it	2.536
r_mcbond_it	1.775
r_mcbond_other	1.77
r_angle_refined_deg	1.368
r_angle_other_deg	1.076
r_nbd_refined	0.233
r_symmetry_xyhbond_nbd_refined	0.219
r_nbd_other	0.206
r_symmetry_nbd_refined	0.201
r_nbtor_refined	0.191
r_symmetry_nbd_other	0.145
r_ncsr_local_group_1	0.12
r_ncsr_local_group_3	0.12
r_xyhbond_nbd_refined	0.112
r_ncsr_local_group_2	0.1
r_symmetry_nbtor_other	0.084
r_chiral_restr	0.075
r_bond_refined_d	0.011
r_gen_planes_refined	0.005
r_bond_other_d	0.004
r_gen_planes_other	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2007
Nucleic Acid Atoms
Solvent Atoms	7
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing