7O2D

Unspecific peroxygenase from Hypoxylon sp. EC38 in complex with 2-(N-morpholino) ethanesulfonic acid (MES)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP29320% PEG500 MME, 10% PEG20000, 0.1 M MES monohydrate pH 6.5
Crystal Properties
Matthews coefficientSolvent content
3.6266.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.111α = 90
b = 73.111β = 90
c = 154.193γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2020-07-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.6829.8199.80.1360.1390.0270.99922.526.312383
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.682.8199.30.9280.9460.1790.99126.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2.6829.811187838799.20.20220.20040.2559RANDOM56.255
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.514.51-9.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.13
r_dihedral_angle_4_deg17.214
r_dihedral_angle_3_deg15.466
r_dihedral_angle_1_deg6.219
r_angle_refined_deg1.775
r_angle_other_deg1.286
r_chiral_restr0.065
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_gen_planes_other0.005
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.13
r_dihedral_angle_4_deg17.214
r_dihedral_angle_3_deg15.466
r_dihedral_angle_1_deg6.219
r_angle_refined_deg1.775
r_angle_other_deg1.286
r_chiral_restr0.065
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_gen_planes_other0.005
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1763
Nucleic Acid Atoms
Solvent Atoms4
Heterogen Atoms112

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing