7O18

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH I-BET282


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION293200mM CaCl2, 25% OEG4K, 100mM Tris HCl, pH 8.5
Crystal Properties
Matthews coefficientSolvent content
238.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.548α = 90
b = 46.293β = 90
c = 61.412γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU SATURN A2002011-06-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E+ SUPERBRIGHT1.54178

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.736.9793.90.04323.23.9251029
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7661.90.1195.62.15

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUEin house model1.734.9991293364293.3050.1720.16990.210124.632
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.2840.389-0.104
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.376
r_dihedral_angle_4_deg16.107
r_dihedral_angle_3_deg12.506
r_dihedral_angle_1_deg6.084
r_lrange_it5.342
r_lrange_other5.341
r_scangle_it2.631
r_scangle_other2.629
r_scbond_it1.629
r_scbond_other1.628
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.376
r_dihedral_angle_4_deg16.107
r_dihedral_angle_3_deg12.506
r_dihedral_angle_1_deg6.084
r_lrange_it5.342
r_lrange_other5.341
r_scangle_it2.631
r_scangle_other2.629
r_scbond_it1.629
r_scbond_other1.628
r_mcangle_it1.6
r_mcangle_other1.6
r_angle_refined_deg1.392
r_angle_other_deg1.258
r_mcbond_it1.026
r_mcbond_other1.024
r_symmetry_nbd_refined0.271
r_nbd_refined0.199
r_nbd_other0.188
r_symmetry_nbd_other0.177
r_nbtor_refined0.177
r_xyhbond_nbd_refined0.137
r_symmetry_xyhbond_nbd_refined0.133
r_symmetry_nbtor_other0.082
r_chiral_restr0.065
r_bond_refined_d0.006
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1036
Nucleic Acid Atoms
Solvent Atoms186
Heterogen Atoms41

Software

Software
Software NamePurpose
REFMACrefinement
d*TREKdata reduction