7NSN

Multi-domain GH92 alpha-1,2-mannosidase from Neobacillus novalis: mannoimidazole complex

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		290	21% PEG 3350, 0.1 M bis-Tris-propane pH 6.6, 0.2M sodium citrate, MMS

Crystal Properties
Matthews coefficient	Solvent content
2.63	53.22

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 94.605	α = 90
b = 151.937	β = 94.63
c = 114.007	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2018-07-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.91587	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.29	47.923	98.1	0.132	0.186	0.131	0.981	5.1	2.9		141182

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.29	2.33	99.5		0.777	1.09	0.763	0.505	1.1	3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2wzs	2.29	47.923	141144	6947	97.987	0.207	0.2053	0.2458	32.923

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.719		-4.093	-0.854		-0.199

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.222
r_dihedral_angle_4_deg	17.692
r_dihedral_angle_3_deg	16.452
r_lrange_it	9.701
r_dihedral_angle_1_deg	7.254
r_scangle_it	5.139
r_mcangle_it	4.344
r_scbond_it	3.548
r_mcbond_it	2.927
r_angle_refined_deg	1.533
r_nbtor_refined	0.312
r_nbd_refined	0.216
r_symmetry_xyhbond_nbd_refined	0.203
r_symmetry_nbd_refined	0.161
r_xyhbond_nbd_refined	0.13
r_chiral_restr	0.113
r_ncsr_local_group_1	0.069
r_bond_refined_d	0.008
r_gen_planes_refined	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	20140
Nucleic Acid Atoms
Solvent Atoms	561
Heterogen Atoms	89

Software

Software
Software Name	Purpose
XDS	data reduction
XDS	data scaling
xia2	data reduction
xia2	data scaling
Aimless	data scaling
MOLREP	phasing
REFMAC	refinement