☰ Navigation Tabs
Mycobacterium tuberculosis transcriptional regulator EthR with bound inhibitory compound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5NIO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 300 Vapour diffusion
Crystal Properties Matthews coefficient Solvent content 2.61 52.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.445 α = 90 b = 121.445 β = 90 c = 33.717 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 85.87 100 0.999 10.4 12.4 43625
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.47 1.5 0.767 1.08
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5NIO 1.47 85.87 41673 1895 99.98 0.1938 0.1929 0.2012 0.2111 0.2189 RANDOM 27.12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 0.86 -1.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.547 r_dihedral_angle_4_deg 18.386 r_dihedral_angle_3_deg 13.084 r_dihedral_angle_1_deg 5.275 r_mcangle_it 3.646 r_mcbond_it 2.582 r_mcbond_other 2.572 r_angle_other_deg 2.357 r_angle_refined_deg 1.942 r_chiral_restr 0.119
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.547 r_dihedral_angle_4_deg 18.386 r_dihedral_angle_3_deg 13.084 r_dihedral_angle_1_deg 5.275 r_mcangle_it 3.646 r_mcbond_it 2.582 r_mcbond_other 2.572 r_angle_other_deg 2.357 r_angle_refined_deg 1.942 r_chiral_restr 0.119 r_gen_planes_other 0.041 r_bond_other_d 0.035 r_gen_planes_refined 0.019 r_bond_refined_d 0.017
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1499 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction pointless data reduction Aimless data scaling PHASER phasing