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First-in-class small molecule inhibitors of Polycomb Repressive Complex 1 (PRC1) RING domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N TROSY 0.12 mM [U-2H; U-13C; U-15N; CH3 ILV] Ring1B-BMI1 95% H2O/5% D2O 150 mM 6.8 1 atm 303.3 Bruker AVANCE III 600 2 3D HNCA 0.12 mM [U-2H; U-13C; U-15N; CH3 ILV] Ring1B-BMI1 95% H2O/5% D2O 150 mM 6.8 1 atm 303.3 Bruker AVANCE III 600 3 3D HNCO 0.12 mM [U-2H; U-13C; U-15N; CH3 ILV] Ring1B-BMI1 95% H2O/5% D2O 150 mM 6.8 1 atm 303.3 Bruker AVANCE III 600 4 3D HNCACO 0.12 mM [U-2H; U-13C; U-15N; CH3 ILV] Ring1B-BMI1 95% H2O/5% D2O 150 mM 6.8 1 atm 303.3 Bruker AVANCE III 600 5 3D HN(CO)CA 0.12 mM [U-2H; U-13C; U-15N; CH3 ILV] Ring1B-BMI1 95% H2O/5% D2O 150 mM 6.8 1 atm 303.3 Bruker AVANCE III 600 8 3D HNCACB 0.12 mM [U-2H; U-13C; U-15N; CH3 ILV] Ring1B-BMI1 95% H2O/5% D2O 150 mM 6.8 1 atm 303.3 Bruker AVANCE III 600 7 3D CBCA(CO)NH 0.12 mM [U-2H; U-13C; U-15N; CH3 ILV] Ring1B-BMI1 95% H2O/5% D2O 150 mM 6.8 1 atm 303.3 Bruker AVANCE III 600 6 3D 1H-15N NOESY 0.12 mM [U-2H; U-13C; U-15N; CH3 ILV] Ring1B-BMI1 95% H2O/5% D2O 150 mM 6.8 1 atm 303.3 Bruker AVANCE III 600 9 3D 1H-13C NOESY aliphatic 0.12 mM [U-2H; U-13C; U-15N; CH3 ILV] Ring1B-BMI1 95% H2O/5% D2O 150 mM 6.8 1 atm 303.3 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600
NMR Refinement Method Details Software molecular dynamics HADDOCK
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement HADDOCK 2.4 Bonvin 2 structure calculation HADDOCK Bonvin 3 chemical shift assignment Sparky Goddard 4 peak picking Sparky Goddard