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HDM2 in complex with compound 56
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 undisclosed
Crystal Properties Matthews coefficient Solvent content 1.99 38.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.925 α = 90 b = 68.341 β = 113.12 c = 42.105 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 38.74 98.8 0.094 0.108 0.998 13.85 4 16664 31.631
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.86 2.11 98.1 0.574 0.028 0.999 3.8 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.86 38.74 14856 1651 99.06 0.1934 0.186 0.1948 0.2585 0.2598 RANDOM 33.682
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.24 1.07 -1.38 -1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.535 r_dihedral_angle_4_deg 18.267 r_dihedral_angle_3_deg 15.2 r_dihedral_angle_1_deg 7.071 r_angle_refined_deg 2.44 r_angle_other_deg 1.377 r_chiral_restr 0.155 r_bond_refined_d 0.025 r_gen_planes_refined 0.014 r_bond_other_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.535 r_dihedral_angle_4_deg 18.267 r_dihedral_angle_3_deg 15.2 r_dihedral_angle_1_deg 7.071 r_angle_refined_deg 2.44 r_angle_other_deg 1.377 r_chiral_restr 0.155 r_bond_refined_d 0.025 r_gen_planes_refined 0.014 r_bond_other_d 0.007 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1566 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 78
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction REFMAC phasing