☰ Navigation Tabs
Crystal structure of BCX7353(ORLADEYO) in complex with human plasma kallikrein serine protease domain at 2.1 angstrom resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ANY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 290 25% PEG 6000, 0.1MES buffer
Crystal Properties Matthews coefficient Solvent content 2.48 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.726 α = 90 b = 59.752 β = 90 c = 79.023 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 200K osmic mirrors 2017-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5180
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 40.39 97.6 0.069 0.031 0.963 37.7 3.9 15531 3 23.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.16 85 0.169 0.108 0.963 9 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2ANY 2.097 40.39 3 15472 769 98.21 0.202 0.1991 0.1992 0.2592 0.2581 25.053
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.001 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.885 r_dihedral_angle_3_deg 14.913 r_dihedral_angle_4_deg 13.985 r_dihedral_angle_1_deg 8.424 r_lrange_it 6.732 r_lrange_other 6.716 r_scangle_it 4.504 r_scangle_other 4.496 r_mcangle_other 4.06 r_mcangle_it 4.056
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.885 r_dihedral_angle_3_deg 14.913 r_dihedral_angle_4_deg 13.985 r_dihedral_angle_1_deg 8.424 r_lrange_it 6.732 r_lrange_other 6.716 r_scangle_it 4.504 r_scangle_other 4.496 r_mcangle_other 4.06 r_mcangle_it 4.056 r_scbond_it 2.772 r_scbond_other 2.763 r_mcbond_it 2.486 r_mcbond_other 2.46 r_chiral_restr_other 1.647 r_angle_refined_deg 1.623 r_angle_other_deg 1.362 r_nbd_refined 0.209 r_nbd_other 0.196 r_symmetry_nbd_other 0.186 r_symmetry_nbd_refined 0.182 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.16 r_symmetry_xyhbond_nbd_refined 0.154 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1828 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing