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Fusion Peptide of SARS-CoV-2 Spike Rearranges into a Wedge Inserted in Bilayered Micelles
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N TROSY 0.4 mM [U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800 2 2D 1H-13C HSQC aliphatic 0.4 mM [U-99% 13C; U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800 3 3D HNCO 0.4 mM [U-99% 13C; U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800 4 3D HNCACO 0.4 mM [U-99% 13C; U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800 5 3D CBCA(CO)NH 0.4 mM [U-99% 13C; U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800 6 3D HNCACB 0.4 mM [U-99% 13C; U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800 7 3D C(CO)NH 0.4 mM [U-99% 13C; U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800 8 3D H(CCO)NH 0.4 mM [U-99% 13C; U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800 9 3D HCCH-TOCSY 0.4 mM [U-99% 13C; U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800 10 3D 15N Separated NOESY 0.4 mM [U-99% 13C; U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800 11 3D 13C Separated NOESY 0.4 mM [U-99% 13C; U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800 12 3D 13C TROSY edited NOESY 0.4 mM [U-99% 13C; U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800 13 2D 13C (Hb)Cb(CgCd)Hd 0.4 mM [U-99% 13C; U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800 14 2D 13C (Hb)Cb(CgCd)He 0.4 mM [U-99% 13C; U-99% 15N] Spike Fusion Peptide, Bicelles 90% H2O/10% D2O 0 M 5.0 0 Pa 305 Bruker AVANCE III 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 800 2 Bruker AVANCE III 800
NMR Refinement Method Details Software molecular dynamics GROMACS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 15 Representative Model 1 (medoid)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment NMRFAM-SPARKY Woonghee Lee , Marco Tonelli , John L Markley 2 structure calculation CYANA 3.0 Guntert, Mumenthaler and Wuthrich 3 refinement GROMACS Berendsen 4 peak picking NMRFAM-SPARKY Woonghee Lee , Marco Tonelli , John L Markley