☰ Navigation Tabs
Crystal Structure of Putative Universal Stress Protein from Pseudomonas aeruginosa UCBPP-PA14
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MT0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 292 Protein: 16.2 mg/ml, 0.5 Sodium chloride, 0.01M Tris pH 8.3;
Screen: PACT (C11), 0.2M Calcium chloride, 0.1M HEPES pH 7.0, 20% (w/v) PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.09 41.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.069 α = 90 b = 67.866 β = 110.89 c = 48.527 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD C(111) 2019-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 30 100 0.055 0.055 0.063 0.03 23.3 4.2 72361 -3 14
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.27 99.8 0.729 0.729 0.868 0.464 0.508 1.73 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3mt0 1.25 27.17 68352 3666 99.94 0.1297 0.1282 0.1284 0.1566 0.1558 RANDOM 19.647
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 0.04 0.55 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.297 r_dihedral_angle_4_deg 15.372 r_dihedral_angle_3_deg 9.274 r_dihedral_angle_1_deg 4.178 r_angle_refined_deg 1.36 r_rigid_bond_restr 1.01 r_angle_other_deg 0.376 r_chiral_restr 0.066 r_gen_planes_refined 0.056 r_gen_planes_other 0.052
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.297 r_dihedral_angle_4_deg 15.372 r_dihedral_angle_3_deg 9.274 r_dihedral_angle_1_deg 4.178 r_angle_refined_deg 1.36 r_rigid_bond_restr 1.01 r_angle_other_deg 0.376 r_chiral_restr 0.066 r_gen_planes_refined 0.056 r_gen_planes_other 0.052 r_bond_refined_d 0.006 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2129 Nucleic Acid Atoms Solvent Atoms 415 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction HKL-3000 data scaling PHASER phasing