7M7X
NMR Solution Structure of a CsrA-binding peptide
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 2 mM na peptide | 50% H2O/50% CD3CN | na | 3.4 | 1 atm | 298 | Bruker AVANCE III HD 600 |
2 | 2D 1H-1H ROESY | 2 mM na peptide | 50% H2O/50% CD3CN | na | 3.4 | 1 atm | 298 | Bruker AVANCE III HD 600 |
3 | 2D 1H-13C HSQC | 2 mM na peptide | 50% H2O/50% CD3CN | na | 3.4 | 1 atm | 298 | Bruker AVANCE III HD 600 |
4 | 2D 1H-15N HSQC | 2 mM na peptide | 50% H2O/50% CD3CN | na | 3.4 | 1 atm | 298 | Bruker AVANCE III HD 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III HD | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | TopSpin | 3.6 | Bruker Biospin |
2 | chemical shift assignment | CcpNmr Analysis | CCPN | |
3 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |