7M5T | pdb_00007m5t

Solution NMR structure of de novo designed protein 0515

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
15	2D 1H-13C HSQC aliphatic	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
16	2D 1H-13C HSQC aromatic	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
2	3D HNCACB-B	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
3	3D HN(CO)CACB-B	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
4	3D HNCO-B	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
14	3D HN(CA)CO	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
5	3D HNCA-B	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
6	3D HBHA(CO)NH	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
7	3D C(CO)NH	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
8	3D TOCSY-NHSQC	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
9	3D 1H-13C NOESY aliphatic	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
10	3D 1H-13C NOESY aromatic	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
11	3D 1H-15N NOESY	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
12	3D CCH-TOCSY aliph	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
13	3D CCH-TOCSY arom	0.9 mM [U-13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800
17	2D 1H-13C HSQC ct	0.3 mM [U-5% 13C; U-15N] protein, 25 mM HEPES, 50 mM sodium chloride, 0.02 % sodium azide	95% H2O/5% D2O	50 mM	7.2	1 atm	298	Bruker AVANCE III 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	800

NMR Refinement
Method	Details	Software
DGSA-distance geometry simulated annealing	with explicit water	CNS

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (medoid)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS	1.3	Brunger, Adams, Clore, Gros, Nilges and Read
2	structure calculation	CYANA	3.98.13	Guntert, Mumenthaler and Wuthrich
3	chemical shift assignment	I-PINE		Lee, Bahrami, Dashti, Eghbalnia, Tonelli, Westler and Markley
4	peak picking	NMRFAM-SPARKY	1.37	Lee W, Tonelli M, Markley JL
5	processing	NMRPipe	v10.9	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6	collection	TopSpin	3.2	Bruker Biospin
7	data analysis	ASDP	2.3	Huang, Tejero, Powers, and Montelione
8	data analysis	PSVS	1.5	Bhattacharya, Tejero, and Montelione
11	data analysis	PdbStat	5.20.4	Tejero
10	structure calculation	TALOS-N		Shen and Bax