☰ Navigation Tabs
HPK1 IN COMPLEX WITH COMPOUND 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other previously solved structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 7% PEG 5K MNE, 0.05 M HEPES pH 6.5, Na3Cit pH 7, 20 mM Tris pH 8.0 , 150 mM NaCl , 5% Glycerol
Crystal Properties Matthews coefficient Solvent content 2.35 47.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.074 α = 90.02 b = 76.627 β = 97.02 c = 89.2 γ = 89.98
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-06-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 88.53 94.7 0.034 0.045 0.999 12.37 2.2 74742 50.827
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.26 92.6 0.448 0.59 0.998 2.15 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT previously solved structure 2.01 88.53 72002 1704 93.4 0.2483 0.2477 0.2507 0.278 0.2769 RANDOM 80.406
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.09 -0.64 5.88 -2.9 0.5 -2.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.067 r_dihedral_angle_4_deg 13.805 r_dihedral_angle_3_deg 13.121 r_dihedral_angle_1_deg 6.035 r_angle_refined_deg 1.47 r_angle_other_deg 1.19 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.067 r_dihedral_angle_4_deg 13.805 r_dihedral_angle_3_deg 13.121 r_dihedral_angle_1_deg 6.035 r_angle_refined_deg 1.47 r_angle_other_deg 1.19 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9102 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 120
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction REFMAC phasing