7LU8
Structure of the cryptic HMA domain of the human copper transporter ATP7A
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.35 mM [U-13C; U-15N] HMA2A, 50 mM HEPES, 150 mM sodium chloride, 5 mM TCEP | 95% H2O/5% D2O | 210 mM | 7.4 | 1 atm | 298 | Bruker AVANCE III 600 |
2 | 3D HNCA | 0.35 mM [U-13C; U-15N] HMA2A, 50 mM HEPES, 150 mM sodium chloride, 5 mM TCEP | 95% H2O/5% D2O | 210 mM | 7.4 | 1 atm | 298 | Bruker AVANCE III 600 |
3 | 3D HNCACB | 0.35 mM [U-13C; U-15N] HMA2A, 50 mM HEPES, 150 mM sodium chloride, 5 mM TCEP | 95% H2O/5% D2O | 210 mM | 7.4 | 1 atm | 298 | Bruker AVANCE III 600 |
4 | 3D 1H-15N NOESY | 0.35 mM [U-13C; U-15N] HMA2A, 50 mM HEPES, 150 mM sodium chloride, 5 mM TCEP | 95% H2O/5% D2O | 210 mM | 7.4 | 1 atm | 298 | Bruker AVANCE III 600 |
7 | 3D CBCA(CO)NH | 0.35 mM [U-13C; U-15N] HMA2A, 50 mM HEPES, 150 mM sodium chloride, 5 mM TCEP | 95% H2O/5% D2O | 210 mM | 7.4 | 1 atm | 298 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 900 |
2 | Varian | Uniform NMR System | 600 |
3 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | torsion angle dynamics | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 2000 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
3 | collection | VNMR | Varian | |
6 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | peak picking | APES | Lee | |
1 | chemical shift assignment | NMRFAM-SPARKY | Lee, Tonelli, Markley | |
8 | chemical shift assignment | I-PINE | Lee, Bahrami, Dashti, Eghbalnia, Tonelli, Westler and Markley | |
7 | structure calculation | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
2 | structure calculation | PONDEROSA-C/S | Lee, Stark, Markley | |
9 | data analysis | AUDANA | Lee, Petit, Cornilescu, Stark, Markley | |
5 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |