7LA3

Pseudomonas fluorescens G150A isocyanide hydratase (G150A-3) at 274K, Refmac5-refined


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.629823% PEG 3350, 100MM TRIS-HCL PH 8.6, 200 MM MAGNESIUM CHLORIDE AND 2 MM DITHIOTHREITOL
Crystal Properties
Matthews coefficientSolvent content
2.244.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.318α = 90
b = 58.245β = 112.744
c = 69.095γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray274PIXELDECTRIS PILATUS 6MFlat Si Rh coated M0, Kirkpatrick-Baez flat bent Si M1 & M22018-11-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL12-20.775SSRLBL12-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.34939.17930.0640.99862.185576
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.3491.38901.3840.2640.92

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE6NI51.34939.1784895260291.9480.1210.12010.1554random18.122
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.249-0.180.2610.103
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.001
r_dihedral_angle_4_deg19.215
r_dihedral_angle_3_deg13.206
r_dihedral_angle_1_deg6.379
r_lrange_it3.108
r_lrange_other3.027
r_scangle_it2.738
r_scangle_other2.738
r_scbond_it2.191
r_scbond_other2.191
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.001
r_dihedral_angle_4_deg19.215
r_dihedral_angle_3_deg13.206
r_dihedral_angle_1_deg6.379
r_lrange_it3.108
r_lrange_other3.027
r_scangle_it2.738
r_scangle_other2.738
r_scbond_it2.191
r_scbond_other2.191
r_mcangle_other1.955
r_mcangle_it1.952
r_mcbond_it1.537
r_rigid_bond_restr1.53
r_mcbond_other1.529
r_angle_refined_deg1.466
r_angle_other_deg1.423
r_xyhbond_nbd_refined0.224
r_nbd_refined0.221
r_symmetry_xyhbond_nbd_refined0.196
r_symmetry_nbd_other0.177
r_nbd_other0.158
r_nbtor_refined0.157
r_symmetry_nbd_refined0.126
r_symmetry_xyhbond_nbd_other0.092
r_chiral_restr0.078
r_symmetry_nbtor_other0.078
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3374
Nucleic Acid Atoms
Solvent Atoms323
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
autoXDSdata reduction
Aimlessdata scaling
PHASERphasing