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Structure of XL5-ligated hRpn13 Pru domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-13C NOESY 0.4 mM [U-13C] 13C_protein, 0.48 mM ligand 20% H2O/70% D2O/10% DMSO 0.11 M 6.5 ambient atm 283.15 Bruker AVANCE III 850 2 3D 1H-15N NOESY 0.25 mM [U-15N] protein, 0.5 mM ligand 90% H2O/10% DMSO 0.11 M 6.5 ambient atm 283.15 Bruker AVANCE III 850 3 3D 1H-13C half-filtered NOESY 0.25 mM [U-13C] 13C_protein, 0.5 mM ligand 90% H2O/10% DMSO 0.11 M 6.5 ambient atm 283.15 Bruker AVANCE III 850 4 2D 1H-13C half-filtered NOESY 0.5 mM protein, 0.5 mM [U-13C] ligand 90% H2O/10% DMSO 0.11 M 6.5 ambient atm 283.15 Bruker AVANCE III 850 5 3D 1H-13C half-filtered NOESY 0.4 mM protein, 0.4 mM [U-13C] ligand 20% H2O/70% D2O/10% DMSO 0.11 M 6.5 ambient atm 283.15 Bruker AVANCE III 850
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 3 Bruker AVANCE III 850
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 chemical shift assignment XEASY Bartels et al. 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax