7KXI

Structure of XL5-ligated hRpn13 Pru domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-13C NOESY0.4 mM [U-13C] 13C_protein, 0.48 mM ligand20% H2O/70% D2O/10% DMSO0.11 M6.5ambient atm283.15Bruker AVANCE III 850
23D 1H-15N NOESY0.25 mM [U-15N] protein, 0.5 mM ligand90% H2O/10% DMSO0.11 M6.5ambient atm283.15Bruker AVANCE III 850
33D 1H-13C half-filtered NOESY0.25 mM [U-13C] 13C_protein, 0.5 mM ligand90% H2O/10% DMSO0.11 M6.5ambient atm283.15Bruker AVANCE III 850
42D 1H-13C half-filtered NOESY0.5 mM protein, 0.5 mM [U-13C] ligand90% H2O/10% DMSO0.11 M6.5ambient atm283.15Bruker AVANCE III 850
53D 1H-13C half-filtered NOESY0.4 mM protein, 0.4 mM [U-13C] ligand20% H2O/70% D2O/10% DMSO0.11 M6.5ambient atm283.15Bruker AVANCE III 850
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
3BrukerAVANCE III850
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
2chemical shift assignmentXEASYBartels et al.
3processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax