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Structure of hSTING in complex with novel carbocyclic pyrimidine CDN 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4KSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 26.0% PEG 3350, 0.200M Ammonium Sulfate, 0.1M bis-tris pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.31 46.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.495 α = 90 b = 78.539 β = 96.52 c = 36.01 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2020-08-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.1806 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 44.46 99.7 0.104 0.119 0.057 0.997 8.4 4.1 8802
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.48 2.58 99.7 1.269 1.457 0.704 0.381 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4KSY 2.48 35.8 8377 420 99.61 0.1842 0.1814 0.1873 0.2415 0.2513 RANDOM 60.133
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 1.24 0.23 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.962 r_dihedral_angle_4_deg 20.05 r_dihedral_angle_3_deg 16.257 r_dihedral_angle_1_deg 6.987 r_angle_refined_deg 1.574 r_angle_other_deg 1.237 r_chiral_restr 0.076 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.962 r_dihedral_angle_4_deg 20.05 r_dihedral_angle_3_deg 16.257 r_dihedral_angle_1_deg 6.987 r_angle_refined_deg 1.574 r_angle_other_deg 1.237 r_chiral_restr 0.076 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1465 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 41
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction PHASER phasing