X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.22980.1 M phoshate/citrate pH 4.2, 40% ethanol, 5% PEG 1000
Crystal Properties
Matthews coefficientSolvent content
1.5621.28

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 8.36α = 90
b = 51.61β = 109.096
c = 9.53γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2018-08-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-E0.97918APS24-ID-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.125.8193.30.1820.2240.9553.332.636292610.188
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.11.1362.70.3510.4620.9461.392.007

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONAB INITIO PHASINGFREE R-VALUE1.125.805292629393.7820.1580.15620.16946.298
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.396-0.326-0.316-0.688
RMS Deviations
KeyRefinement Restraint Deviation
r_rigid_bond_restr8.451
r_dihedral_angle_3_deg6.783
r_dihedral_angle_1_deg2.65
r_scangle_it2.539
r_scangle_other2.516
r_scbond_it2.283
r_scbond_other2.258
r_angle_refined_deg1.815
r_angle_other_deg1.613
r_lrange_other1.277
RMS Deviations
KeyRefinement Restraint Deviation
r_rigid_bond_restr8.451
r_dihedral_angle_3_deg6.783
r_dihedral_angle_1_deg2.65
r_scangle_it2.539
r_scangle_other2.516
r_scbond_it2.283
r_scbond_other2.258
r_angle_refined_deg1.815
r_angle_other_deg1.613
r_lrange_other1.277
r_lrange_it1.215
r_mcbond_it0.837
r_mcbond_other0.77
r_mcangle_other0.769
r_mcangle_it0.76
r_symmetry_nbd_refined0.341
r_symmetry_nbd_other0.194
r_nbd_other0.191
r_nbtor_refined0.15
r_symmetry_nbtor_other0.126
r_xyhbond_nbd_refined0.115
r_symmetry_xyhbond_nbd_refined0.098
r_nbd_refined0.057
r_chiral_restr0.051
r_bond_refined_d0.012
r_bond_other_d0.009
r_gen_planes_refined0.004
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms84
Nucleic Acid Atoms
Solvent Atoms5
Heterogen Atoms16

Software

Software
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SHELXDphasing