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NMR structure of the Streptococcus pyogenes NAD+-glycohydrolase translocation domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 15N-edited NOESY-TROSY-HSQC 1 mM [U-13C; U-15N] NADase translocation domain, 20mM MES, 50mM NaCl 90% H2O/10% D2O 50mM NaCl mM 5.5 ambient 303 Bruker AVANCE III 800 2 3D 13C-edited NOESY 1 mM [U-13C; U-15N] NADase translocation domain, 20mM MES, 50mM NaCl 90% H2O/10% D2O 50mM NaCl mM 5.5 ambient 303 Bruker AVANCE III 800 3 2D 1H-15N TROSY HSQC 0.56 mM [U-13C; U-15N; U-2H] NADase translocation domain, 20mM MES, 80mM NaCl, 0.5mM EDTA 90% H2O/10% D2O 80mM NaCl mM 5.5 ambient 303 Bruker AVANCE III HD 600 4 3D TROSY HNCA 0.56 mM [U-13C; U-15N; U-2H] NADase translocation domain, 20mM MES, 80mM NaCl, 0.5mM EDTA 90% H2O/10% D2O 80mM NaCl mM 5.5 ambient 303 Bruker AVANCE III HD 600 5 3D TROSY HNCACB 0.56 mM [U-13C; U-15N; U-2H] NADase translocation domain, 20mM MES, 80mM NaCl, 0.5mM EDTA 90% H2O/10% D2O 80mM NaCl mM 5.5 ambient 303 Bruker AVANCE III HD 600 6 3D TROSY HN(CA)CO 0.56 mM [U-13C; U-15N; U-2H] NADase translocation domain, 20mM MES, 80mM NaCl, 0.5mM EDTA 90% H2O/10% D2O 80mM NaCl mM 5.5 ambient 303 Bruker AVANCE III HD 600 7 3D TROSY HNCO 0.56 mM [U-13C; U-15N; U-2H] NADase translocation domain, 20mM MES, 80mM NaCl, 0.5mM EDTA 90% H2O/10% D2O 80mM NaCl mM 5.5 ambient 303 Bruker AVANCE III HD 600 8 3D TROSY HN(CO)CA 0.56 mM [U-13C; U-15N; U-2H] NADase translocation domain, 20mM MES, 80mM NaCl, 0.5mM EDTA 90% H2O/10% D2O 80mM NaCl mM 5.5 ambient 303 Bruker AVANCE III HD 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 800 2 Bruker AVANCE III HD 600
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria 15 structures for lowest energy Conformers Calculated Total Number 150 Conformers Submitted Total Number 15 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 3 chemical shift assignment CARA Keller and Wuthrich 4 chemical shift assignment XEASY Bartels et al. 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 data analysis Sparky Goddard 7 collection TopSpin Bruker Biospin