☰ Navigation Tabs
PanDDA Analysis group deposition -- Crystal structure of PTP1B in complex with FMOMB000297a
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 0.3 M magnesium acetate, 0.1 M HEPES pH 7.5, 0.1% beta-mercaptoethanol, 13-14% PEG 8000, 2% ethanol
Crystal Properties Matthews coefficient Solvent content 3.29 62.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.61 α = 90 b = 89.61 β = 90 c = 106.127 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-09-25 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92819 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 77.604 99.9 0.075 0.084 0.999 13.68 56845 -3 46.463
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.08 2.21 99.5 0.873 0.979 0.504 1.56
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.08 62.64 28747 1180 99.99 0.1904 0.1891 0.257 0.2236 0.2774 RANDOM 45.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.07 -0.15 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.528 r_dihedral_angle_4_deg 18.033 r_dihedral_angle_3_deg 15.987 r_dihedral_angle_1_deg 6.646 r_mcangle_it 4.619 r_mcbond_it 3.438 r_mcbond_other 3.313 r_angle_refined_deg 1.486 r_angle_other_deg 1.296 r_chiral_restr 0.079
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.528 r_dihedral_angle_4_deg 18.033 r_dihedral_angle_3_deg 15.987 r_dihedral_angle_1_deg 6.646 r_mcangle_it 4.619 r_mcbond_it 3.438 r_mcbond_other 3.313 r_angle_refined_deg 1.486 r_angle_other_deg 1.296 r_chiral_restr 0.079 r_bond_refined_d 0.034 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2317 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction PHASER phasing XDS data reduction