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Crystal Structure of apo mouse FABP4, C-centered orthorhombic form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other inhouse model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 protein in 25mM Tris/HCl pH 7.5 100mM NaCl, see also PMID 27658368
Crystal Properties Matthews coefficient Solvent content 3.07 59.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.801 α = 90 b = 94.742 β = 90 c = 49.864 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2012-08-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.999980 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 47.37 98.9 0.033 0.033 0.039 1 21.92 6.54 30207 31.462
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.53 97.3 1.519 1.646 0.702 1.43 6.692
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT inhouse model 1.49 47.37 27639 1474 95.42 0.1441 0.1427 0.1401 0.1702 0.1693 RANDOM 30.358
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 -0.51 0.85
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 32.634 r_dihedral_angle_2_deg 32.383 r_dihedral_angle_4_deg 22.411 r_sphericity_bonded 20.598 r_dihedral_angle_3_deg 12.324 r_dihedral_angle_1_deg 5.818 r_rigid_bond_restr 4.974 r_angle_refined_deg 2.008 r_angle_other_deg 0.811 r_chiral_restr 0.107
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 32.634 r_dihedral_angle_2_deg 32.383 r_dihedral_angle_4_deg 22.411 r_sphericity_bonded 20.598 r_dihedral_angle_3_deg 12.324 r_dihedral_angle_1_deg 5.818 r_rigid_bond_restr 4.974 r_angle_refined_deg 2.008 r_angle_other_deg 0.811 r_chiral_restr 0.107 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1025 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 13
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing