☰ Navigation Tabs
PanDDA analysis group deposition -- PHIP in complex with Z1435810807
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7AV9 7av9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 277 20% PEG 8000, 0.04M potassium phosphate
Crystal Properties Matthews coefficient Solvent content 1.79 31.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.058 α = 90 b = 27.731 β = 99.93 c = 56.361 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2022-09-24 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92124 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.19 27.77 84 0.05 0.055 0.022 0.968 21.1 5.2 34046
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.19 1.21 22.1 0.306 0.422 0.289 0.905 1.3 446
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 7av9 1.19 27.77 32341 1705 83.83 0.1755 0.1745 0.2136 0.1946 0.2299 RANDOM 19.239
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.43 0.84 -0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.048 r_dihedral_angle_4_deg 16.97 r_dihedral_angle_3_deg 13.787 r_dihedral_angle_1_deg 6.665 r_mcangle_it 3.063 r_angle_refined_deg 1.662 r_mcbond_other 1.536 r_mcbond_it 1.493 r_angle_other_deg 1.42 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.048 r_dihedral_angle_4_deg 16.97 r_dihedral_angle_3_deg 13.787 r_dihedral_angle_1_deg 6.665 r_mcangle_it 3.063 r_angle_refined_deg 1.662 r_mcbond_other 1.536 r_mcbond_it 1.493 r_angle_other_deg 1.42 r_chiral_restr 0.093 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1003 Nucleic Acid Atoms Solvent Atoms 199 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction REFMAC phasing