7F0V | pdb_00007f0v

Structure of the M305I mutant of CueO

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3OD3

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	PEG3350, KNO3

Crystal Properties
Matthews coefficient	Solvent content
1.96	37.24

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 49.798	α = 86.979
b = 49.922	β = 80.626
c = 95.933	γ = 70.535

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2021-01-27	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SPRING-8 BEAMLINE BL32XU	1.00000	SPring-8	BL32XU

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.494	47.371	92.8	0.991	5.63	8.7		132574

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rrim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.494	1.58	93.3		1.065

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3od3	1.494	47.371	132574	6644	95.127	0.189	0.1872	0.19	0.2322	0.24	37.442

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.009	-1.395	0.062	0.558	0.355	-2.574

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.601
r_dihedral_angle_4_deg	18.48
r_dihedral_angle_3_deg	15.415
r_dihedral_angle_1_deg	7.78
r_lrange_it	6.814
r_lrange_other	6.808
r_scangle_it	5.288
r_scangle_other	5.287
r_mcangle_it	4.049
r_mcangle_other	4.049
r_scbond_it	3.747
r_scbond_other	3.746
r_mcbond_it	3.067
r_mcbond_other	3.067
r_angle_refined_deg	1.718
r_angle_other_deg	1.31
r_symmetry_xyhbond_nbd_refined	0.213
r_nbd_refined	0.208
r_nbd_other	0.197
r_symmetry_nbd_other	0.191
r_nbtor_refined	0.157
r_xyhbond_nbd_refined	0.139
r_symmetry_nbd_refined	0.132
r_metal_ion_refined	0.084
r_symmetry_nbtor_other	0.08
r_chiral_restr	0.072
r_symmetry_xyhbond_nbd_other	0.03
r_bond_refined_d	0.01
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	7288
Nucleic Acid Atoms
Solvent Atoms	571
Heterogen Atoms	42

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
XSCALE	data scaling
BALBES	phasing