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Apo Truncated VhChiP (Delta 1-19)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5MDO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 292 0.1 M Lithium sulfate, 0.1 M ADA pH 5.2, and 26% v/v PEG 400
Crystal Properties Matthews coefficient Solvent content 3.25 62.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.244 α = 90 b = 151.388 β = 111.117 c = 95.827 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARMOSAIC 300 mm CCD LN2-Cooled Fixed-Exit Double Crystal Si(111) Monochromator , A Pair of K-B Focusing Mirrors 2020-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE TPS 05A 0.9 NSRRC TPS 05A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20.0033313589 89.3637 0.119 0.061 0.868 7.3 3.1 43095 31.8229899268
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 7.98 0.911
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 5MDO 2.50002374963 20.0033313589 1.37519310272 43095 2137 89.3512471232 0.180844482218 0.17849148474 0.1795 0.225165189353 0.2265 33.0130337587
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 4.96005903933 f_angle_d 0.857270906898 f_chiral_restr 0.0520704805849 f_bond_d 0.00722857113392 f_plane_restr 0.00470238150537
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7731 Nucleic Acid Atoms Solvent Atoms 355 Heterogen Atoms 63
Software Software Software Name Purpose PHENIX refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing