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The structure of rice Defective Pollen Wall (DPW) in the complex with its cofactor NADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 291 2.8 M sodium formate, pH 7.0, 0.1 M magnesium chloride hexahydrate, 0.1 M HEPES, pH 7.5, 5% (w/v) PEG 3350
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 222.814 α = 90 b = 222.814 β = 90 c = 114.024 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 270 2012-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 0.9798 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 50 99.8 0.136 16 11.1 48784
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.36 100 0.788 10.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.4 48.45 41278 2223 97.66 0.1938 0.1913 0.2156 0.2396 0.2274 RANDOM 94.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.02 0.05 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.318 r_dihedral_angle_3_deg 26.142 r_dihedral_angle_4_deg 23.363 r_dihedral_angle_1_deg 11.095 r_angle_refined_deg 2.18 r_angle_other_deg 1.329 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_gen_planes_other 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.318 r_dihedral_angle_3_deg 26.142 r_dihedral_angle_4_deg 23.363 r_dihedral_angle_1_deg 11.095 r_angle_refined_deg 2.18 r_angle_other_deg 1.329 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7435 Nucleic Acid Atoms Solvent Atoms 85 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PDB_EXTRACT data extraction HKL-2000 data reduction PHENIX phasing