7EMM

Crystal structure of IrCp* immobilized apo-R52H-rHLFr

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	Ammonium sulfate (0.5-1.0M), Cadmium sulfate(12-20mM)

Crystal Properties
Matthews coefficient	Solvent content
3.25	62.19

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 182.064	α = 90
b = 182.064	β = 90
c = 182.064	γ = 90

Symmetry
Space Group	F 4 3 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-06-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SPRING-8 BEAMLINE BL45XU	1.05	SPring-8	BL45XU

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.25	45.557	100	0.166	0.168	0.02	1	2.5	73.1		71449

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.25	1.27			0.848

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1DAT	1.25	41.768	71442	3614	99.985	0.175	0.1746	0.1855	13.196

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.673
r_dihedral_angle_4_deg	18.107
r_dihedral_angle_3_deg	12.383
r_lrange_it	5.784
r_lrange_other	5.499
r_dihedral_angle_1_deg	4.688
r_scangle_it	3.887
r_scangle_other	3.883
r_scbond_it	2.661
r_scbond_other	2.606
r_mcangle_it	2.396
r_mcangle_other	2.396
r_angle_refined_deg	2.193
r_angle_other_deg	1.592
r_mcbond_it	1.534
r_mcbond_other	1.51
r_symmetry_metal_ion_refined	0.418
r_symmetry_nbd_refined	0.381
r_metal_ion_refined	0.307
r_nbd_refined	0.295
r_xyhbond_nbd_refined	0.264
r_symmetry_nbd_other	0.195
r_nbtor_refined	0.19
r_nbd_other	0.168
r_symmetry_xyhbond_nbd_refined	0.154
r_chiral_restr	0.118
r_symmetry_nbtor_other	0.095
r_bond_refined_d	0.02
r_symmetry_xyhbond_nbd_other	0.019
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1380
Nucleic Acid Atoms
Solvent Atoms	242
Heterogen Atoms	27

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing
Coot	model building