7EK1 | pdb_00007ek1

Cryo-EM structure of VCCN1 in detergent


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.071
r_lrange_it27.851
r_lrange_other27.85
r_scangle_it22.721
r_scangle_other22.715
r_dihedral_angle_4_deg20.48
r_mcangle_it16.807
r_mcangle_other16.805
r_dihedral_angle_3_deg16.13
r_scbond_it16.103
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.071
r_lrange_it27.851
r_lrange_other27.85
r_scangle_it22.721
r_scangle_other22.715
r_dihedral_angle_4_deg20.48
r_mcangle_it16.807
r_mcangle_other16.805
r_dihedral_angle_3_deg16.13
r_scbond_it16.103
r_scbond_other16.097
r_mcbond_it12.914
r_mcbond_other12.91
r_dihedral_angle_1_deg5.361
r_angle_refined_deg1.83
r_angle_other_deg1.679
r_symmetry_xyhbond_nbd_refined0.347
r_ext_dist_refined_d0.318
r_xyhbond_nbd_refined0.229
r_nbd_refined0.196
r_nbd_other0.193
r_symmetry_nbd_other0.162
r_nbtor_refined0.162
r_symmetry_nbd_refined0.148
r_chiral_restr0.118
r_symmetry_nbtor_other0.074
r_bond_other_d0.05
r_bond_refined_d0.015
r_gen_planes_refined0.005
r_gen_planes_other0.002
Sample
Bestrophin-like protein
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles117986
Reported Resolution (Å)3
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryC5
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeFEI FALCON III (4k x 4k)
Electron Dose (electrons/Å**2)50
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
CTF CORRECTIONCTFFIND4.1.13
INITIAL EULER ASSIGNMENTRELION3.0
FINAL EULER ASSIGNMENTRELION3.0
CLASSIFICATIONRELION3.0
RECONSTRUCTIONRELION3.0
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION322637