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Human histidine decarboxylase mutant Y334F soaking with histidine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 293 0.1 M Tris-HCl (pH 8.5), 28% (w/v) PEG 3350, 0.2 M lithium sulfate
Crystal Properties Matthews coefficient Solvent content 2.12 42.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.93 α = 90 b = 84.998 β = 90 c = 187.417 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2012-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0000 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 100 0.107 19.9 7.3 47992
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 0.61
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 2.2 36.43 47905 2425 99.919 0.169 0.1665 0.1734 0.2241 0.2234 34.338
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.668 -0.475 1.143
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.378 r_dihedral_angle_4_deg 16.626 r_dihedral_angle_3_deg 16.005 r_dihedral_angle_1_deg 7.407 r_lrange_it 4.302 r_lrange_other 4.291 r_scangle_it 3.324 r_scangle_other 3.298 r_mcangle_it 2.518 r_mcangle_other 2.518
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.378 r_dihedral_angle_4_deg 16.626 r_dihedral_angle_3_deg 16.005 r_dihedral_angle_1_deg 7.407 r_lrange_it 4.302 r_lrange_other 4.291 r_scangle_it 3.324 r_scangle_other 3.298 r_mcangle_it 2.518 r_mcangle_other 2.518 r_scbond_it 2.207 r_scbond_other 2.192 r_angle_refined_deg 2.097 r_mcbond_it 1.756 r_mcbond_other 1.756 r_angle_other_deg 1.442 r_symmetry_nbd_refined 0.252 r_nbd_refined 0.216 r_symmetry_nbd_other 0.19 r_nbtor_refined 0.177 r_nbd_other 0.164 r_xyhbond_nbd_refined 0.141 r_symmetry_xyhbond_nbd_refined 0.124 r_chiral_restr 0.098 r_symmetry_nbtor_other 0.092 r_bond_refined_d 0.017 r_gen_planes_refined 0.013 r_symmetry_xyhbond_nbd_other 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7424 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing