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Solution NMR structure of the RRM domain of RNA binding protein RBM3 from homo sapiens
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.0 mM [U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600 2 2D 1H-15N HSQC 0.6 mM [U-100% 13C; U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600 4 2D 1H-13C HSQC 0.6 mM [U-100% 13C; U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600 5 2D 1H-13C HSQC 0.7 mM [U-10% 13C; U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600 6 3D CBCA(CO)NH 0.6 mM [U-100% 13C; U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600 7 3D HNCACB 0.6 mM [U-100% 13C; U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600 8 3D HNCO 0.6 mM [U-100% 13C; U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600 9 3D HN(CA)CO 0.6 mM [U-100% 13C; U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600 10 3D C(CO)NH 0.6 mM [U-100% 13C; U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600 11 3D HBHA(CO)NH 0.6 mM [U-100% 13C; U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600 12 3D HCCH-TOCSY 0.6 mM [U-100% 13C; U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600 13 3D 1H-15N TOCSY 1.0 mM [U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600 14 3D 1H-13C NOESY 0.6 mM [U-100% 13C; U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600 15 3D 1H-15N NOESY 1.0 mM [U-100% 15N] RNA Binding Motif 3 (RBM3) protein 93% H2O/7% D2O 1 6.5 1 atm 298 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600
NMR Refinement Method Details Software simulated annealing PONDEROSA-C/S
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis Sparky Goddard 4 peak picking NMRFAM-SPARKY Woonghee Lee 1 chemical shift assignment NMRFAM-SPARKY Woonghee Lee 2 structure calculation PONDEROSA-C/S Woonghee Lee 6 refinement PONDEROSA Lee, W., Stark, J.L., and Markley, J.L.