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Human Transcriptional Co-activator PC4 (C-terminal Domain) in space group P1211
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PCF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 285 20% MPD, 150-200 MM NACL, Phosphate Buffer (PH 5-5.2)
Crystal Properties Matthews coefficient Solvent content 3.55 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.012 α = 90 b = 166.844 β = 93.27 c = 108.309 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2019-04-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON RRCAT INDUS-2 BEAMLINE PX-BL21 0.97947 RRCAT INDUS-2 PX-BL21
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 108.13 99.53 0.988 7.7 3.8 38333 41.79
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 99.84 0.614 1.41
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1PCF 2.9 108.13 36465 1868 99.7 0.2301 0.2277 0.2307 0.2776 0.2779 RANDOM 47.565
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.47 -1.05 -1.92 -2.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.026 r_dihedral_angle_4_deg 19.189 r_dihedral_angle_3_deg 17.204 r_dihedral_angle_1_deg 6.557 r_angle_refined_deg 1.534 r_angle_other_deg 0.935 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.026 r_dihedral_angle_4_deg 19.189 r_dihedral_angle_3_deg 17.204 r_dihedral_angle_1_deg 6.557 r_angle_refined_deg 1.534 r_angle_other_deg 0.935 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8662 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data processing Aimless data scaling PHENIX model building XDS data reduction PHASER phasing