☰ Navigation Tabs
Cyrstal structure of PETase E186A mutant from Rhizobacter gummiphilus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7DZT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 298 Sodium citrate tribasic, Tris, NaCl
Crystal Properties Matthews coefficient Solvent content 2.66 53.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.988 α = 90 b = 54.627 β = 90 c = 108.887 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2020-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 99.4 0.096 0.1 0.028 14.2 12.4 40798
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 97.5 0.365 0.379 0.103 0.985 12.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7DZT 1.6 30.25 38676 2057 99.09 0.1341 0.1329 0.1441 0.1571 0.1659 RANDOM 12.936
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.82 1.56 -0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.362 r_dihedral_angle_4_deg 13.572 r_dihedral_angle_3_deg 11.302 r_dihedral_angle_1_deg 6.46 r_angle_refined_deg 2.006 r_angle_other_deg 1.685 r_chiral_restr 0.119 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.362 r_dihedral_angle_4_deg 13.572 r_dihedral_angle_3_deg 11.302 r_dihedral_angle_1_deg 6.46 r_angle_refined_deg 2.006 r_angle_other_deg 1.685 r_chiral_restr 0.119 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2000 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 12
Software Software Software Name Purpose HKL-2000 data reduction HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction MOLREP phasing