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Apo structure of wild type Bt4394, a GH20 family sulfoglycosidase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RCN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 282 PEG 10000, MES, Cl
Crystal Properties Matthews coefficient Solvent content 2.49 50.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.585 α = 90 b = 63.001 β = 111.344 c = 78.69 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2019-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.979183 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 73.29 99 0.091 0.997 12.6 5.9 76353
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.62 1.65 0.594 0.682 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3rcn 1.62 73.29 76333 3960 98.862 0.147 0.1448 0.1436 0.1885 0.1868 25.006
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.654 1.766 -3.949 1.467
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.741 r_dihedral_angle_4_deg 18.538 r_dihedral_angle_3_deg 12.486 r_dihedral_angle_1_deg 6.475 r_lrange_it 4.039 r_scangle_it 3.381 r_scbond_it 3.025 r_rigid_bond_restr 2.523 r_mcangle_it 2.503 r_mcbond_it 2.053
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.741 r_dihedral_angle_4_deg 18.538 r_dihedral_angle_3_deg 12.486 r_dihedral_angle_1_deg 6.475 r_lrange_it 4.039 r_scangle_it 3.381 r_scbond_it 3.025 r_rigid_bond_restr 2.523 r_mcangle_it 2.503 r_mcbond_it 2.053 r_angle_refined_deg 1.232 r_nbtor_refined 0.309 r_symmetry_xyhbond_nbd_refined 0.212 r_nbd_refined 0.198 r_symmetry_nbd_refined 0.152 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.093 r_bond_refined_d 0.006 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4257 Nucleic Acid Atoms Solvent Atoms 485 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement XDS data reduction