7DTI | pdb_00007dti

Solution structure of the complex between RNA polymerase subunit RPB6 and TFIIH p62 PH domain

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.38 mM [U-100% 13C; U-100% 15N] RPB6, 0.38 mM TFIIH p62	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 950
14	2D 1H-15N HSQC	0.38 mM [U-100% 13C; U-100% 15N] TFIIH p62, 0.38 mM RPB6	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 950
2	2D 1H-13C HSQC	0.38 mM [U-100% 13C; U-100% 15N] RPB6, 0.38 mM TFIIH p62	100% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 950
15	2D 1H-13C HSQC	0.38 mM [U-100% 13C; U-100% 15N] TFIIH p62, 0.38 mM RPB6	100% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 950
3	2D 1H-13C HSQC aromatic	0.38 mM [U-100% 13C; U-100% 15N] RPB6, 0.38 mM TFIIH p62	100% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 950
16	2D 1H-13C HSQC aroma	0.38 mM [U-100% 13C; U-100% 15N] TFIIH p62, 0.38 mM RPB6	100% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 950
4	3D CBCA(CO)NH	0.38 mM [U-100% 13C; U-100% 15N] RPB6, 0.38 mM TFIIH p62	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
17	3D CBCA(CO)NH	0.38 mM [U-100% 13C; U-100% 15N] TFIIH p62, 0.38 mM RPB6	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
5	3D CBCANH	0.38 mM [U-100% 13C; U-100% 15N] RPB6, 0.38 mM TFIIH p62	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
18	3D CBCANH	0.38 mM [U-100% 13C; U-100% 15N] TFIIH p62, 0.38 mM RPB6	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
6	3D HNCO	0.38 mM [U-100% 13C; U-100% 15N] RPB6, 0.38 mM TFIIH p62	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
19	3D HNCO	0.38 mM [U-100% 13C; U-100% 15N] TFIIH p62, 0.38 mM RPB6	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
7	3D HN(CA)CO	0.38 mM [U-100% 13C; U-100% 15N] RPB6, 0.38 mM TFIIH p62	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
20	3D HN(CA)CO	0.38 mM [U-100% 13C; U-100% 15N] TFIIH p62, 0.38 mM RPB6	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
10	3D HNCA	0.38 mM [U-100% 13C; U-100% 15N] RPB6, 0.38 mM TFIIH p62	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
21	3D HNCA	0.38 mM [U-100% 13C; U-100% 15N] TFIIH p62, 0.38 mM RPB6	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
11	3D HN(CO)CA	0.38 mM [U-100% 13C; U-100% 15N] RPB6, 0.38 mM TFIIH p62	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
22	3D HN(CO)CA	0.38 mM [U-100% 13C; U-100% 15N] TFIIH p62, 0.38 mM RPB6	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
8	3D HBHA(CO)NH	0.38 mM [U-100% 13C; U-100% 15N] RPB6, 0.38 mM TFIIH p62	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
23	3D HBHA(CO)NH	0.38 mM [U-100% 13C; U-100% 15N] TFIIH p62, 0.38 mM RPB6	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
9	3D HBHANH	0.38 mM [U-100% 13C; U-100% 15N] RPB6, 0.38 mM TFIIH p62	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
24	3D HBHANH	0.38 mM [U-100% 13C; U-100% 15N] TFIIH p62, 0.38 mM RPB6	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 600
12	3D 1H-15N NOESY	0.38 mM [U-100% 13C; U-100% 15N] RPB6, 0.38 mM TFIIH p62	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 950
25	3D 1H-15N NOESY	0.38 mM [U-100% 13C; U-100% 15N] TFIIH p62, 0.38 mM RPB6	90% H2O/10% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 950
13	3D 1H-13C NOESY	0.38 mM [U-100% 13C; U-100% 15N] RPB6, 0.38 mM TFIIH p62	100% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 950
26	3D 1H-13C NOESY	0.38 mM [U-100% 13C; U-100% 15N] TFIIH p62, 0.38 mM RPB6	100% D2O	25 mM	6.8	1 atm	298	Bruker AVANCE III HD 950

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III HD	600
2	Bruker	AVANCE III HD	950

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	peak picking	NMRView		Johnson, One Moon Scientific
3	chemical shift assignment	NMRView		Johnson, One Moon Scientific
4	structure calculation	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
5	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore