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Solution structure of RPB6, common subunit of RNA polymerases I, II, and III
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 2 2D 1H-13C HSQC 2.0 mM [U-100% 13C; U-100% 15N] RPB6 100% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 950 3 2D 1H-13C HSQC aromatic 2.0 mM [U-100% 13C; U-100% 15N] RPB6 100% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 950 4 3D CBCA(CO)NH 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 5 3D CBCANH 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 6 3D HNCO 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 7 3D HN(CA)CO 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 8 3D HBHA(CO)NH 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 9 3D HBHANH 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 10 3D HN(CO)HB 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 11 3D HNHB 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 12 3D HN(CO)CG 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 13 3D HNCG 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 14 3D CC(CO)NH 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 15 3D HCC(CO)NH 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 16 3D HCCH-COSY 2.0 mM [U-100% 13C; U-100% 15N] RPB6 100% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 17 3D HCCH-TOCSY 2.0 mM [U-100% 13C; U-100% 15N] RPB6 100% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 18 3D 1H-15N NOESY 2.0 mM [U-100% 13C; U-100% 15N] RPB6 90% H2O/10% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 600 19 3D 1H-13C NOESY 2.0 mM [U-100% 13C; U-100% 15N] RPB6 100% D2O 25 mM 6.8 1 atm 298 Bruker AVANCE III HD 950
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III HD 600 2 Bruker AVANCE III HD 950
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 peak picking NMRView Johnson, One Moon Scientific 3 chemical shift assignment NMRView Johnson, One Moon Scientific 4 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 5 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore