7DSF

The Crystal Structure of human SPR from Biortus.

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.01M ZnCl2, 0.1M NaAc PH5, 20% PEG 6000

Crystal Properties
Matthews coefficient	Solvent content
2.27	41.36

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 55.893	α = 90
b = 74.56	β = 90
c = 121.176	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2020-11-24	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SPRING-8 BEAMLINE BL45XU	1.00000	SPring-8	BL45XU

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	47.065	99.8	0.068	14.6	5.4		47688

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.84			0.435	2.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6I6C	1.8	47.065	47612	2289	99.759	0.195	0.1939	0.2177	24.486

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.391			1.295		0.096

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.317
r_dihedral_angle_4_deg	19.329
r_dihedral_angle_3_deg	11.571
r_dihedral_angle_1_deg	5.965
r_lrange_it	3.53
r_lrange_other	3.442
r_scangle_it	1.604
r_scangle_other	1.604
r_mcangle_it	1.55
r_mcangle_other	1.55
r_angle_refined_deg	1.318
r_angle_other_deg	1.156
r_scbond_it	0.963
r_scbond_other	0.963
r_mcbond_it	0.889
r_mcbond_other	0.887
r_symmetry_nbd_refined	0.265
r_symmetry_xyhbond_nbd_refined	0.223
r_nbd_refined	0.181
r_symmetry_nbd_other	0.164
r_nbd_other	0.155
r_nbtor_refined	0.136
r_xyhbond_nbd_refined	0.136
r_metal_ion_refined	0.085
r_symmetry_nbtor_other	0.074
r_chiral_restr	0.047
r_bond_refined_d	0.003
r_gen_planes_refined	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3895
Nucleic Acid Atoms
Solvent Atoms	247
Heterogen Atoms	106

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing