7DEE

Structural Basis of the regulation of DISC Assembly by the interaction of c-FLIPs with Procaspase-8


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC04 mM C8-H1a, 0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs95% H2O/5% D2O110 mM7.41 Pa298Bruker 1 700
22D 1H-13C HSQC10 mM C8-H1a, 0.002 % v/v sodium azide, 110 mM sodium phosphate95% H2O/5% D2O110 mM7.41 Pa298Bruker 1 700
32D 1H-1H TOCSY10 mM C8-H1a, 0.002 % v/v sodium azide, 110 mM sodium phosphate95% H2O/5% D2O110 mM7.41 Pa298Bruker 1 700
43D 1H-15N NOESY04 mM C8-H1a, 0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs95% H2O/5% D2O110 mM7.41 Pa298Bruker 1 700
53D 1H-13C NOESY04 mM C8-H1a, 0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs95% H2O/5% D2O110 mM7.41 Pa298Bruker 1 700
173D 1H-15N Filtered NOESY04 mM C8-H1a, 0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs95% H2O/5% D2O110 mM7.41 Pa298Bruker 1 700
163D 1H-13C Filttered NOESY04 mM C8-H1a, 0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs95% H2O/5% D2O110 mM7.41 Pa298Bruker 1 700
152D 1H-15N HSQC0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs, 1 mM TCEP, 1 mM EDTA95% H2O/5% D2O60 mM7.41 Pa298Bruker 2 800
142D 1H-13C HSQC0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs, 1 mM TCEP, 1 mM EDTA95% H2O/5% D2O60 mM7.41 Pa298Bruker 2 800
133D HNCO0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs, 1 mM TCEP, 1 mM EDTA95% H2O/5% D2O60 mM7.41 Pa298Bruker 2 800
123D HNCACB0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs, 1 mM TCEP, 1 mM EDTA95% H2O/5% D2O60 mM7.41 Pa298Bruker 2 800
113D CBCA(CO)NH0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs, 1 mM TCEP, 1 mM EDTA95% H2O/5% D2O60 mM7.41 Pa298Bruker 3 600
103D HBHA(CO)NH0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs, 1 mM TCEP, 1 mM EDTA95% H2O/5% D2O60 mM7.41 Pa298Bruker 3 600
93D HCCH-TOCSY0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs, 1 mM TCEP, 1 mM EDTA95% H2O/5% D2O60 mM7.41 Pa298Bruker 2 800
83D CCH-TOCSY0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs, 1 mM TCEP, 1 mM EDTA95% H2O/5% D2O60 mM7.41 Pa298Bruker 2 800
73D HNCA0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs, 1 mM TCEP, 1 mM EDTA95% H2O/5% D2O60 mM7.41 Pa298Bruker 2 800
63D 1H-15N NOESY0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs, 1 mM TCEP, 1 mM EDTA95% H2O/5% D2O60 mM7.41 Pa298Bruker 2 800
183D 1H-13C NOESY0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs, 1 mM TCEP, 1 mM EDTA95% H2O/5% D2O60 mM7.41 Pa298Bruker 2 800
192D 1H-1H Fltered NOESY04 mM C8-H1a, 0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs95% H2O/5% D2O110 mM7.41 Pa298Bruker 1 700
202D 1H-1H Filtered TOCSY04 mM C8-H1a, 0.002 % v/v sodium azide, 110 mM sodium phosphate, 0.6 mM [U-99% 13C; U-99% 15N] c-FLIPs95% H2O/5% D2O110 mM7.41 Pa298Bruker 1 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1Bruker1700
2Bruker2800
3Bruker3600
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentSparkyGoddard
2structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
3peak pickingSparkyGoddard
4collectionTopSpinBruker Biospin