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Solution structure of an RNA derived from the joint region of the TAR and PolyA stems of HIV-1 genomic RNA
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 100 uM A60-10%13C,15N RNA (36-MER) 95% H2O/5% D2O 50 mM 6.5 1 atm 283 Bruker AVANCE 600 2 2D HOHAHA 100 uM A60-10%13C,15N RNA (36-MER) 95% H2O/5% D2O 50 mM 6.5 1 atm 283 Bruker AVANCE 600 5 2D 1H-13C HSQC 100 uM A60-10%13C,15N RNA (36-MER) 95% H2O/5% D2O 50 mM 6.5 1 atm 283 Bruker AVANCE 600 3 2D NOESY 100 uM A60-10%13C,15N RNA (36-MER) 95% H2O/5% D2O 50 mM 6.5 1 atm 283 Bruker AVANCE 800 4 2D HOHAHA 100 uM A60-10%13C,15N RNA (36-MER) 95% H2O/5% D2O 50 mM 6.5 1 atm 283 Bruker AVANCE 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 11 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 2 structure calculation CNS 1.3 Brunger, Adams, Clore, Gros, Nilges and Read 3 chemical shift assignment Sparky Goddard 4 peak picking Sparky Goddard