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Crystal structure of the archaeal EF1A-EF1B complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3WY9 3WY9, 2YY3 experimental model PDB 2YY3 3WY9, 2YY3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M HEPES-NaOH pH 7.0, 10% w/v PEG6000, 5% v/v MPD
Crystal Properties Matthews coefficient Solvent content 2.39 48.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.149 α = 112.9 b = 70.194 β = 91.77 c = 77.822 γ = 89.98
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210r 2013-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 44.41 96.6 0.046 16.2 3.9 70518
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.12 0.32
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3WY9, 2YY3 2 44.41 66026 3475 95.18 0.2273 0.2247 0.2348 0.2752 0.2787 RANDOM 49.397
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 -0.16 -0.63 -2.78 0.55 1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.494 r_dihedral_angle_4_deg 18.097 r_dihedral_angle_3_deg 16.771 r_dihedral_angle_1_deg 7.252 r_angle_refined_deg 1.689 r_angle_other_deg 1.007 r_chiral_restr 0.101 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.494 r_dihedral_angle_4_deg 18.097 r_dihedral_angle_3_deg 16.771 r_dihedral_angle_1_deg 7.252 r_angle_refined_deg 1.689 r_angle_other_deg 1.007 r_chiral_restr 0.101 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7992 Nucleic Acid Atoms Solvent Atoms 251 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction MOLREP phasing