7CSK

A 2:1 stoichiometric complex of anticancer drug Adriamycin bound to parallel G-quadruplex DNA [d-(TTGGGGT)]4.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY1.15 mM DNA (5'-D(*TP*TP*GP*GP*GP*GP*T)-3'), 2.30 mM Adriamycin90% H2O/10% D2O100 mM7.01 atm298Bruker AVANCE 500
21D 1H1.15 mM DNA (5'-D(*TP*TP*GP*GP*GP*GP*T)-3'), 2.30 mM Adriamycin90% H2O/10% D2O100 mM7.01 atm298Bruker AVANCE 500
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number20
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementAmber16Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2structure calculationAmber16Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
3chemical shift assignmentTopSpin3.6.1Bruker Biospin
4peak pickingTopSpin3.6.1Bruker Biospin