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Solution structure of 28 amino acid polypeptide (354-381) in Plantago asiatica mosaic virus replicase bound to SDS micelle
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 16 3D 1H-15N NOESY 1 mM [U-13C; U-15N] PlAMV replicase peptide, 20 mM [U-2H] sodium acetate, 100 mM [U-2H] SDS, 10 % [U-2H] D2O 90% H2O/10% D2O 120 mM 5.6 1 atm 310 Bruker ava 600 28 3D 1H-13C NOESY 1 mM [U-13C; U-15N] PlAMV replicase peptide, 20 mM [U-2H] sodium acetate, 100 mM [U-2H] SDS, 10 % [U-2H] D2O 90% H2O/10% D2O 120 mM 5.6 1 atm 310 Bruker ava 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker ava 600
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 chemical shift assignment NMRView Johnson, One Moon Scientific 5 chemical shift assignment MagRO-NMRView Kobayashi N. 4 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 6 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman